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Publicações


2015

 

  1. Coutinho FH, Meirelles PM, Moreira AP, Paranhos RP, Dutilh BE, Thompson FL. Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review. PeerJ. 2015 Jun 16;3:e1008. doi: 10.7717/peerj.1008. eCollection 2015. PubMed PMID: 26157601; PubMed Central PMCID: PMC4476133.
  2. Meirelles PM, Amado-Filho GM, Pereira-Filho GH, Pinheiro HT, de Moura RL, Joyeux JC, Mazzei EF, Bastos AC, Edwards RA, Dinsdale E, Paranhos R, Santos EO, Iida T, Gotoh K, Nakamura S, Sawabe T, Rezende CE, Gadelha LM Jr, Francini-Filho RB, Thompson C, Thompson FL. Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity,
    Benthic Cover and Fish Biomass Data. PLoS One. 2015 Jun 19;10(6):e0130084. doi: 10.1371/journal.pone.0130084. eCollection 2015. PubMed PMID: 26090804; PubMed Central PMCID: PMC4474894.
  3. Silveira CB, Silva-Lima AW, Francini-Filho RB, Marques JS, Almeida MG, Thompson CC, Rezende CE, Paranhos R, Moura RL, Salomon PS, Thompson FL. Microbial and sponge loops modify fish production in phase-shifting coral reefs. Environ Microbiol. 2015 Mar 26. doi: 10.1111/1462-2920.12851. [Epub ahead of print] PubMed PMID: 25817914.
  4. Amaral GR, Campeão ME, Swings J, Thompson FL, Thompson CC. Finding diagnostic phenotypic features of Photobacterium in the genome sequences. Antonie Van Leeuwenhoek. 2015 May;107(5):1351-8. doi: 10.1007/s10482-015-0414-6. Epub 2015
    Feb 28. PubMed PMID: 25724129.
  5. Ghisolfi RD, Pereira da Silva M, Thomaz dos Santos F, Servino RN, Cirano M, Thompson FL. Physical forcing mechanisms controlling the variability of chlorophyll-a over the Royal-Charlotte and Abrolhos Banks-Eastern Brazilian Shelf. PLoS One. 2015 Feb 20;10(2):e0117082. doi: 10.1371/journal.pone.0117082. eCollection 2015. PubMed PMID: 25700269; PubMed Central PMCID: PMC4336145.
  6. Chimetto Tonon LA, Silva BS, Moreira AP, Valle C, Alves N Jr, Cavalcanti G,Garcia G, Lopes RM, Francini-Filho RB, de Moura RL, Thompson CC, Thompson FL. Diversity and ecological structure of vibrios in benthic and pelagic habitats along a latitudinal gradient in the Southwest Atlantic Ocean. PeerJ. 2015 Feb 10;3:e741. doi: 10.7717/peerj.741. eCollection 2015. PubMed PMID: 25699199; PubMed Central PMCID: PMC4327252.
  7. de Oliveira LS, Tschoeke DA, de Oliveira AS, Hill LJ, Paradas WC, Salgado LT, Thompson CC, Pereira RC, Thompson FL. New Insights on the terpenome of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta). Mar Drugs. 2015 Feb 10;13(2):879-902. doi: 10.3390/md13020879. PubMed PMID: 25675000; PubMed Central PMCID: PMC4344607.
  8. Silva-Lima AW, Walter JM, Garcia GD, Ramires N, Ank G, Meirelles PM, Nobrega AF, Siva-Neto ID, Moura RL, Salomon PS, Thompson CC, Thompson FL. Multiple Symbiodinium Strains Are Hosted by the Brazilian Endemic Corals Mussismilia spp. Microb Ecol. 2015 Aug;70(2):301-10. doi: 10.1007/s00248-015-0573-z. Epub 2015 Feb 10. PubMed PMID: 25666537.
  9. Thompson CC, Amaral GR, Campeão M, Edwards RA, Polz MF, Dutilh BE, Ussery DW, Sawabe T, Swings J, Thompson FL. Microbial taxonomy in the post-genomic era: rebuilding from scratch? Arch Microbiol. 2015 Apr;197(3):359-70. doi: 10.1007/s00203-014-1071-2. Epub 2014 Dec 23. PubMed PMID: 25533848.
  10. Pedro Milet Meirelles, Luiz M. R. Gadelha Jr, Ronaldo Bastos Francini-Filho, Rodrigo Leão de Moura,, Gilberto Menezes Amado-Filho, Alex Cardoso Bastos, Rodolfo Pinheiro da Rocha Paranhos, Carlos Eduardo Rezende, Jean Swings,, Eduardo Siegle8, Nils Edvin Asp Neto9, Sigrid Neumann Leitão0, Ricardo Coutinho, Marta Mattoso, Paulo S. Salomon,, Rogério A.B. Valle, Renato Crespo Pereira, Ricardo Henrique Kruger, Cristiane Thompson, and Fabiano L. Thompson. BaMBa: towards the integrated management of Brazilian marine environmental data. Database (Oxford). 2015; 2015: bav088.

2014

  1. Amaral G. ; Dias GM ; Wellington-Oguri Michiyo ; CHIMETTO, Luciane ; Campeão M ; THOMPSON, C. C. ; THOMPSON, FABIANO L. . Genotype to phenotype: identification of diagnostic vibrios phenotypes using whole genome sequences. International Journal of Systematic and Evolutionary Microbiology (Print), v. february, p. special, 2013. [Link]
  2. Cavalcanti G. ; Gregoracci G.B. ; SANTOS, E. ; SILVEIRA, C. B. ; Meirelles, P. ; Longo L. ; GOTOH, K. ; NAKAMURA, S. ; IIDA, T. ; SAWABE, T. ; Rezende C.E. ; FRANCINI-FILHO, R. B. ; MOURA, R. L. ; AMADO-FILHO, GILBERTO M. ; THOMPSON, FABIANO L. . Physiologic and metagenomic attributes of rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean. The ISME Journal (Print), v. online, p. online, 2013. [Link]
  3. THOMPSON, C. C. ; CHIMETTO, Luciane ; Edwards, R. A. ; SWINGS, J. ; STACKEBRANDT, e ; THOMPSON, FABIANO L. .Microbial Genomic Taxonomy. BMC Genomics, v. online, p. online, 2013. [Link]
  4. Gorriti MF, Dias GM, Chimetto LA, Trindade-Silva AE, Silva BS, Mesquita MM,Gregoracci GB, Farias ME, Thompson CC,Thompson FL. Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from ahigh altitude lake. BMC Genomics. 2014 Jun 13;15(1):473. [Epub ahead of print] PubMed PMID: 24927949.
  5. Moreira AP, Duytschaever G, Tonon LA, Dias GM, Mesquita M, Cnockaert M,Francini-Filho RB, De Vos P, Thompson CC,Thompson FL. Vibrio madracius sp. nov. Isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago,Mid-Atlantic Ridge, Brazil. Curr Microbiol. 2014 May 14. [Epub ahead of print] PubMed PMID: 24824949.
  6. Moreira AP, Tonon LA, Pereira Cdo V, Alves N Jr, Amado-Filho GM,Francini-Filho RB, Paranhos R, Thompson FL. Culturable heterotrophic bacteria associated with healthy and bleached scleractinian Madracis decactis and the fireworm Hermodice carunculata from the remote St. Peter and St. PaulArchipelago, Brazil. Curr Microbiol. 2014 Jan;68(1):38-46. doi:10.1007/s00284-013-0435-1. Epub 2013 Aug 25.  PubMed  PMID: 23979060.
  7. BIOME highlights
    http://www.biomedcentral.com/biome/why-is-cholera-the-deadly-disease-that-refuses-to-die/
  8. Samodha C. Fernando, Jia Wang, Kimberly Sparling, Gizele Garcia, Ronaldo B. Francini-Filho, Rodrigo L. de Moura, Rodolfo Paranhos, Fabiano L. Thompson, Janelle R. Thompson. 2014. Microbiota of the Maj or South Atlantic Reef Building Coral Mussismilia. Microbial Ecology.
  9. Dutilh BE, Thompson CC, Vicente AC, Marin MA, Lee C, Silva GG, Schmieder R, Andrade BG, Chimetto L, Cuevas D, Garza DR, Okeke IN, Aboderin AO, Spangler J, Ross T, Dinsdale EA, Thompson FL, Harkins TT, Edwards RA. Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions. BMC Genomics. 2014 Aug 5;15(1):654. [Epub ahead of print] PubMed PMID: 25096633.
  10. Gorriti MF, Dias GM, Chimetto LA, Trindade-Silva AE, Silva BS, Mesquita MM, Gregoracci GB, Farias ME, Thompson CC, Thompson FL. Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake. BMC Genomics. 2014 Jun 13;15(1):473. doi: 10.1186/1471-2164-15-473. PubMed PMID: 24927949; PubMed Central PMCID: PMC4094778.
  11. Moreira AP, Duytschaever G, Chimetto Tonon LA, Fróes AM, de Oliveira LS, Amado-Filho GM, Francini-Filho RB, De Vos P, Swings J, Thompson CC, Thompson FL. Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. PeerJ. 2014 Jun 19;2:e427. doi: 10.7717/peerj.427. eCollection 2014. PubMed PMID: 25024905; PubMed Central PMCID: PMC4081156.
  12. Nelson Alves Junior, Pedro Milet Meirelles, Eidy de Oliveira Santos, Bas Dutilh, Genivaldo G. Z. Silva, Rodolfo Paranhos, Anderson S. Cabral, Carlos Rezende,Tetsuya Iida, Rodrigo L. de Moura, Ricardo Henrique Kruger, Renato C. Pereira, Rogério Valle, Tomoo Sawabe, Cristiane Thompson,Fabiano Thompson. Microbial community diversity and physical–chemical features of the Southwestern Atlantic Ocean. [Archives of Microbiology]
  13. Badotti F, Moreira AP, Tonon LA, de Lucena BT, Gomes Fde C, Kruger R, Thompson CC, de Morais MA Jr, Rosa CA, Thompson FL. Oenococcus alcoholitolerans sp. nov., a lactic acid bacteria isolated from cachaça and ethanol fermentation processes. Antonie Van Leeuwenhoek. 2014 Dec;106(6):1259-67. doi: 10.1007/s10482-014-0296-z.Epub 2014 Oct 15. PubMed PMID: 25315101.
  14. Tschoeke DA, Moreira AP, Chimetto Tonon LA, de Mesquita MM, Gregoracci GB,Gomez-Gil B, Valle R, Thompson CC, Thompson FL. Exploring the Genome of Cheese Starter Lactic Acid Bacterium Lactococcus lactis subsp. lactis CECT 4433. Genome Announc. 2014 Nov 13;2(6). pii: e01142-14. doi: 10.1128/genomeA.01142-14. PubMed PMID: 25395632; PubMed Central PMCID: PMC4241658.
  15. Nakanishi M, Meirelles P, Suzuki R, Takatani N, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T. Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13. Genome Announc. 2014 Nov 13;2(6). pii: e01165-14. doi: 10.1128/genomeA.01165-14. PubMed PMID: 25395639; PubMed Central
    PMCID: PMC4241665.
  16. Takatani N, Nakanishi M, Meirelles P, Mino S, Suda W, Oshima K, Hattori M,Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T. Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4. Genome Announc. 2014 Nov 13;2(6). pii: e01168-14. doi: 10.1128/genomeA.01168-14. PubMed PMID: 25395640; PubMed Central PMCID: PMC4241666.
  17. Bruce T, Leite FG, Tschoeke DA, Miranda M, Pereira N Jr, Valle R, Thompson CC, Thompson FL. Exploring the Genome of a Butyric Acid Producer, Clostridium butyricum INCQS635. Genome Announc. 2014 Nov 20;2(6). pii: e01169-14. doi: 10.1128/genomeA.01169-14. PubMed PMID: 25414496; PubMed Central PMCID:PMC4239351.
  18. Fernando SC, Wang J, Sparling K, Garcia GD, Francini-Filho RB, de Moura RL, Paranhos R, Thompson FL, Thompson JR. Microbiota of the major South atlantic reef building coral mussismilia. Microb Ecol. 2015 Feb;69(2):267-80. doi: 10.1007/s00248-014-0474-6. Epub 2014 Sep 12. PubMed PMID: 25213651.
  19. Thompson CC, Amaral GR, Campeão M, Edwards RA, Polz MF, Dutilh BE, Ussery DW, Sawabe T, Swings J, Thompson FL. Microbial taxonomy in the post-genomic era:Rebuilding from scratch? Arch Microbiol. 2014 Dec 23. [Epub ahead of print]PubMed PMID: 25533848.